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References

The following publications used webKnossos for their work. Please get in touch with us if your publication is missing.

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    • Science, 2021

    • Title

    • Postnatal connectomic development of inhibition in mouse barrel cortex

    • Authors

    • Anjali Gour, Kevin M. Boergens, Natalie Heike, Yunfeng Hua, Philip Laserstein, Kun Song, Moritz Helmstaedter

    • Publication

    • Cell reports, 2021

    • Title

    • Electron Microscopic Reconstruction of Neural Circuitry in the Cochlea

    • Authors

    • Yunfeng Hua, Xu Ding, Haoyu Wang, Fangfang Wang, Yan Lu, Jakob Neef, Yunge Gao, Tobias Moser, Hao Wu

    • The journal of comparative neurology, 2021

    • Cytoarchitecture and innervation of the mouse cochlear amplifier revealed by large‐scale volume electron microscopy

    • Haoyu Wang, Shengxiong Wang, Yan Lu, Ying Chen, Wenqing Huang, Miaoxin Qiu, Hao Wu, Yunfeng Hua

    • Publication

    • The journal of comparative neurology, 2021

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    • Cytoarchitecture and innervation of the mouse cochlear amplifier revealed by large‐scale volume electron microscopy

    • Authors

    • Haoyu Wang, Shengxiong Wang, Yan Lu, Ying Chen, Wenqing Huang, Miaoxin Qiu, Hao Wu, Yunfeng Hua

    • 2021 (preprint)

    • Functional and multiscale 3D structural investigation of brain tissue through correlative in vivo physiology, synchrotron micro-tomography and volume electron microscopy

    • Carles Bosch, Tobias Ackels, Alexandra Pacureanu, Yuxin Zhang, Christopher J. Peddie, Manuel Berning, Norman Rzepka, Marie-Christine Zdora, Isabell Whiteley, Malte Storm, Anne Bonnin, Christoph Rau, Troy Margrie, Lucy Collinson, Andreas T. Schaefer

    • Publication

    • 2021 (preprint)

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    • Functional and multiscale 3D structural investigation of brain tissue through correlative in vivo physiology, synchrotron micro-tomography and volume electron microscopy

    • Authors

    • Carles Bosch, Tobias Ackels, Alexandra Pacureanu, Yuxin Zhang, Christopher J. Peddie, Manuel Berning, Norman Rzepka, Marie-Christine Zdora, Isabell Whiteley, Malte Storm, Anne Bonnin, Christoph Rau, Troy Margrie, Lucy Collinson, Andreas T. Schaefer

    • IEEE/ACM, 2020

    • Toward an Automated HPC Pipeline for Processing Large Scale ElectronMicroscopy Data

    • Rafael Vescovi, Hanyu Li, Jeffery Kinnison, Murat Keceli, Misha Salim, Narayanan Kasthuri, Thomas D Uram, Nicola Ferrier

    • Publication

    • IEEE/ACM, 2020

    • Title

    • Toward an Automated HPC Pipeline for Processing Large Scale ElectronMicroscopy Data

    • Authors

    • Rafael Vescovi, Hanyu Li, Jeffery Kinnison, Murat Keceli, Misha Salim, Narayanan Kasthuri, Thomas D Uram, Nicola Ferrier

    • PhD Thesis, 2020

    • Connectomic analysis of apical dendrite innervation in pyramidal neurons of mouse cerebral cortex

    • Ali Karimi

    • Publication

    • PhD Thesis, 2020

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    • Connectomic analysis of apical dendrite innervation in pyramidal neurons of mouse cerebral cortex

    • Authors

    • Ali Karimi

    • Publication

    • eLife, 2019

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    • Cell-type specific innervation of cortical pyramidal cells at their apical tufts

    • Authors

    • Ali Karimi, Jan Odenthal, Florian Drawitsch, Kevin M. Boergens, Moritz Helmstaedter

    • Science, 2019

    • Dense connectomic reconstruction in layer 4 of the somatosensory cortex

    • Alessandro Motta, Manuel Berning, Kevin M Boergens, Benedikt Staffler, Marcel Beining, Sahil Loomba, Philipp Hennig, Heiko Wissler, Moritz Helmstaedter

    • Publication

    • Science, 2019

    • Title

    • Dense connectomic reconstruction in layer 4 of the somatosensory cortex

    • Authors

    • Alessandro Motta, Manuel Berning, Kevin M Boergens, Benedikt Staffler, Marcel Beining, Sahil Loomba, Philipp Hennig, Heiko Wissler, Moritz Helmstaedter

    • Publication

    • PhD Thesis, 2019

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    • Machine Learning for Connectomics

    • Authors

    • Benedikt Staffler

    • eLife, 2019

    • Evolution of neuronal anatomy and circuitry in two highly divergent nematode species

    • Ray L Hong, Metta Riebesell, Daniel J Bumbarger, Steven J Cook, Heather R Carstensen, Tahmineh Sarpolaki, Luisa Cochella, Jessica Castrejon, Eduardo Moreno, Bogdan Sieriebriennikov, Oliver Hobert, Ralf J Sommer

    • Publication

    • eLife, 2019

    • Title

    • Evolution of neuronal anatomy and circuitry in two highly divergent nematode species

    • Authors

    • Ray L Hong, Metta Riebesell, Daniel J Bumbarger, Steven J Cook, Heather R Carstensen, Tahmineh Sarpolaki, Luisa Cochella, Jessica Castrejon, Eduardo Moreno, Bogdan Sieriebriennikov, Oliver Hobert, Ralf J Sommer

    • Publication

    • PLOS ONE, 2018

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    • Full reconstruction of large lobula plate tangential cells in Drosophila from a 3D EM dataset

    • Authors

    • Kevin M. Boergens, Christoph Kapfer, Moritz Helmstaedter, Winfried Denk, Alexander Borst

    • Publication

    • eLife, 2018

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    • FluoEM, virtual labeling of axons in threedimensional electron microscopy data for long-range connectomics

    • Authors

    • Florian Drawitsch, Ali Karimi, Kevin M Boergens, Moritz Helmstaedter

    • PhD Thesis, 2018

    • Connectomic analysis of mouse barrel cortex and fly optic lobe

    • Kevin M Boergens

    • Publication

    • PhD Thesis, 2018

    • Title

    • Connectomic analysis of mouse barrel cortex and fly optic lobe

    • Authors

    • Kevin M Boergens

    • PhD Thesis, 2018

    • Large-scale circuit reconstruction in medial entorhinal cortex

    • Helene Schmidt-Helmstaedter

    • Publication

    • PhD Thesis, 2018

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    • Large-scale circuit reconstruction in medial entorhinal cortex

    • Authors

    • Helene Schmidt-Helmstaedter

    • PhD Thesis, 2018

    • Connectomic analysis of the input to the principal cells of the mammalian cerebralcortex

    • Philip Laserstein

    • Publication

    • PhD Thesis, 2018

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    • Connectomic analysis of the input to the principal cells of the mammalian cerebralcortex

    • Authors

    • Philip Laserstein

    • Publication

    • eLife, 2018

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    • Connectomics of the zebrafish's lateral-line neuromast reveals wiring and miswiring in a simple microcircuit

    • Authors

    • Eliot Dow, Adrian Jacobo, Sajjad Hossain, Kimberly Siletti, A J Hudspeth

    • Nature Methods, 2017

    • webKnossos: efficient online 3D data annotation for connectomics

    • Boergens, Berning, Bocklisch, Bräunlein, Drawitsch, Frohnhofen, Herold, Otto, Rzepka, Werkmeister, Werner, Wiese, Wissler, Helmstaedter

    • Publication

    • Nature Methods, 2017

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    • webKnossos: efficient online 3D data annotation for connectomics

    • Authors

    • Boergens, Berning, Bocklisch, Bräunlein, Drawitsch, Frohnhofen, Herold, Otto, Rzepka, Werkmeister, Werner, Wiese, Wissler, Helmstaedter

    • Publication

    • Nature, 2017

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    • Axonal synapse sorting in medial entorhinal cortex

    • Authors

    • Helene Schmidt, Anjali Gour, Jakob Straehle, Kevin M Boergens, Michael Brecht, Moritz Helmstaedter

    • eLife, 2017

    • SynEM, automated synapse detection for connectomics

    • Benedikt Staffler, Manuel Berning, Kevin M Boergens, Anjali Gour, Patrick van der Smagt, Moritz Helmstaedter

    • Publication

    • eLife, 2017

    • Title

    • SynEM, automated synapse detection for connectomics

    • Authors

    • Benedikt Staffler, Manuel Berning, Kevin M Boergens, Anjali Gour, Patrick van der Smagt, Moritz Helmstaedter

    • Current Opinion in Insect Science, 2017

    • Learning from connectomics on the fly

    • Philipp Schlegel, Marta Costa, Gregory SXE Jefferis

    • Publication

    • Current Opinion in Insect Science, 2017

    • Title

    • Learning from connectomics on the fly

    • Authors

    • Philipp Schlegel, Marta Costa, Gregory SXE Jefferis

    • Neuron, 2015

    • SegEM: Efficient Image Analysis for High-Resolution Connectomics

    • Manuel Berning, Kevin M Boergens, Moritz Helmstaedter

    • Publication

    • Neuron, 2015

    • Title

    • SegEM: Efficient Image Analysis for High-Resolution Connectomics

    • Authors

    • Manuel Berning, Kevin M Boergens, Moritz Helmstaedter