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Work on large image datasets, together

Upload data and invite collaborators.Visualize, annotate and quantify.Publish your data alongside your publication.

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Use cases

By role

webKnossos makes it easy to work together with massive image datasets.

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Biologists

Share your raw data. Analyze, measure and annotate your data. Publish data alongside your paper.

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Data scientists

Collaborate with domain experts. Generate training data. Visualize predictions and segmentations.

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Imaging facilities

Securely share image data with collaborators. Manage massive collections of datasets. Start your analysis online.

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Lab leaders

Make it easy for your team to collaborate. Manage annotation projects. Publish data alongside your paper.

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Educators

Show your class published datasets. Have your students annotate neural data.

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Need ground truth for your deep learning project?

Check out your manual annotation services. The easiest way to acquire high-quality annotations. 

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By field

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Neuroscience

Visualize and analyze neural tissue. Upload your data, access and annotate it from anywhere in your browser. Create segmentations collaboratively. 

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Connectomics

Reconstruct the brain's cells and map their connections. Upload your EM-data, access, and annotate it collaboratively. Generate ground truth for your Machine Learning model.  

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Cell biology

Visualize your biological data, segment & analyze cells. Create segmentations collaboratively using volume and skeleton annotation tools. 

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Volume electron microscopy

Share and organize large image datasets in one place. Import your data and send secured links to your collaborators.Fine-grain access controls included.

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Looking for Neuron and Connectome reconstruction?

Check out our image analysis services for neuron and connectome reconstructions from volume EM data. Automate tasks such as image alignment, registration, dense segmentation, and object detection.

Learn moreView case study
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webKnossos has been published in:Boergens Berning Bocklisch Bräunlein Drawitsch Frohnhofen Herold Otto Rzepka Werkmeister Werner Wiese Wissler & Helmstaedter“webKnossos: efficient online 3D data annotation for connectomics”Nature Methods (2017) 14, 691–694.
Contact us at gro.sossonkbew%40olleh.





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IllustrationIllustration

webKnossos has been published in:Boergens Berning Bocklisch Bräunlein Drawitsch Frohnhofen Herold Otto Rzepka Werkmeister Werner Wiese Wissler & Helmstaedter“webKnossos: efficient online 3D data annotation for connectomics”Nature Methods (2017) 14, 691–694.
Contact us at gro.sossonkbew%40olleh.





Mastodon